CDC-Authored Genomics Publication Database: Public Health Genomics Knowledge Base (v1.2)

Public Health Genomics Knowledge Base (v1.2)

338 Publications

Publication
Genome Sequences of Multidrug-Resistant, Colistin-Susceptible and -Resistant Klebsiella pneumoniae Clinical Isolates from Pakistan.  Crawford Matthew A et al. Genome announcements 2016 Dec 4(6)
Serro 2 Virus Highlights the Fundamental Genomic and Biological Features of a Natural Vaccinia Virus Infecting Humans.  Trindade Giliane de Souza et al. Viruses 2016 Dec 8(12)
Analysis of complete genomes of the rubella virus genotypes 1E and 2B which circulated in China, 2000-2013. Zhu Zhen et al. Scientific reports 2016 Dec 639025
Ebola virus persistence in breast milk after no reported illness: a likely source of virus transmission from mother to child.  Sissoko Daouda et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Dec
Universal Human Papillomavirus Typing Assay: Whole Genome Sequencing Following Target Enrichment.  Li Tengguo et al. Journal of clinical microbiology 2016 Dec
Complete Genome Sequences of Enterococcus rotai LMG 26678T and Enterococcus silesiacus LMG 23085T.  Lauer Ana C et al. Genome announcements 2016 Dec (6)
Notes from the Field: New Delhi Metallo-ß-Lactamase-Producing Carbapenem-Resistant Enterobacteriaceae Identified in Patients Without Known Health Care Risk Factors - Colorado, 2014-2016. Janelle Sarah J et al. MMWR. Morbidity and mortality weekly report 2016 Dec (49) 1414-1415
Genetic Diversity of Currently Circulating Rubella Viruses: A Need to Define More Precise Viral Groups.  Rivailler Pierre et al. The Journal of general virology 2016 Dec
Evolution of mitosome metabolism and invasion-related proteins in Cryptosporidium. Liu Shiyou et al. BMC genomics 2016 Dec 17(1) 1006
Novel activities by ebolavirus and marburgvirus interferon antagonists revealed using a standardized in vitro reporter system. Guito Jonathan C et al. Virology 2016 Dec 501147-165
Severity of Respiratory Syncytial Virus Lower Respiratory Tract Infection with Viral Coinfection in HIV-uninfected Children.  Mazur Natalie I et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Dec
High-Throughput Next Generation Sequencing of Polioviruses.  Montmayeur Anna M et al. Journal of clinical microbiology 2016 Dec
Detection and Genomic Characterization of Enterovirus D68 in Respiratory Samples Isolated in the United States in 2016.  Ng Terry Fei Fan et al. Genome announcements 2016 Dec (6)
Shedding of porcine circovirus type 1 DNA and rotavirus RNA by infants vaccinated with Rotarix®. Mijatovic-Rustempasic Slavica et al. Human vaccines & immunotherapeutics 2016 Dec 0
Development of a multiplex taqMan real-time PCR assay for typing of Mycoplasma pneumoniae based on type-specific indels identified through whole genome sequencing.  Wolff Bernard J et al. Diagnostic microbiology and infectious disease 2016 Nov
How Chikungunya Virus Virology Affects Its Epidemiology and Transmission: Implications for Influencing Public Health. Powers Ann M et al. The Journal of infectious diseases 2016 Dec (suppl 5) S449-S452
Tracking Insecticide Resistance in Mosquito Vectors of Arboviruses: The Worldwide Insecticide resistance Network (WIN). Corbel Vincent et al. PLoS neglected tropical diseases 2016 Dec (12) e0005054
Comparative sequence analysis of Cyclospora cayetanensis apicoplast genomes originating from diverse geographical regions. Cinar Hediye Nese et al. Parasites & vectors 2016 Nov (1) 611
Announcement: National Family History Day - November 24, 2016. et al. MMWR. Morbidity and mortality weekly report 2016 Nov 65(46) 1305
CDC Grand Rounds: Family History and Genomics as Tools for Cancer Prevention and Control. Rodriguez Juan L et al. MMWR. Morbidity and mortality weekly report 2016 Nov 65(46) 1291-1294
Emergence of plasmid-mediated colistin resistance and New Delhi metallo-ß-lactamase genes in extensively drug-resistant Escherichia coli isolated from a patient in Thailand.  Paveenkittiporn Wantana et al. Diagnostic microbiology and infectious disease 2016 Nov
Whole genome relationships among Francisella bacteria of diverse origin define new species and provide specific regions for detection.  Challacombe Jean F et al. Applied and environmental microbiology 2016 Nov
Rapid identification of measles virus vaccine genotypes by real time PCR.  Roy Felicia et al. Journal of clinical microbiology 2016 Nov
Metagenomics of two severe foodborne outbreaks provides diagnostic signatures and signs of co-infection not attainable by traditional methods.  Huang Andrew D et al. Applied and environmental microbiology 2016 Nov
Comparison of DNA testing strategies in monitoring human papillomavirus infection prevalence through simulation. Lin Carol Y et al. BMC infectious diseases 2016 Nov 16(1) 642
Evaluation of the Illumigene Malaria LAMP: A Robust Molecular Diagnostic Tool for Malaria Parasites. Lucchi Naomi W et al. Scientific reports 2016 Nov 36808
Comparative studies of infectivity, immunogenicity and cross-protective efficacy of live attenuated influenza vaccines containing nucleoprotein from cold-adapted or wild-type influenza virus in a mouse model. Isakova-Sivak Irina et al. Virology 2016 Nov 500209-217
Detection and Differentiation of Leishmania spp. in Clinical Specimens Using a SYBR Green-Based Real-Time PCR Assay.  de Almeida Marcos E et al. Journal of clinical microbiology 2016 Nov
The rectal mucosa and condomless receptive anal intercourse in HIV-negative MSM: implications for HIV transmission and prevention.  Kelley C F et al. Mucosal immunology 2016 Nov
TIMP1 promotes multi-walled carbon nanotube-induced lung fibrosis by stimulating fibroblast activation and proliferation. Dong Jie et al. Nanotoxicology 2016 Nov 1-26
Complete Genome Sequences for Three Chromosomes of the Burkholderia stabilis Type Strain (ATCC BAA-67).  Bugrysheva Julia V et al. Genome announcements 2016 Nov 4(6)
Human infective potential of Cryptosporidium spp., Giardia duodenalis and Enterocytozoon bieneusi in urban wastewater treatment plant effluents. Ma Jiawen et al. Journal of water and health 2016 Jun 14(3) 411-23
Culex Tarsalis Mosquitoes as Vectors of Highlands J Virus. Borland Erin M et al. Vector borne and zoonotic diseases (Larchmont, N.Y.) 2016 Aug 16(8) 558-65
Optimizing Infant HIV Diagnosis in Resource-Limited Settings: Modeling the Impact of HIV DNA PCR Testing at Birth. Chiu Alexander et al. Journal of acquired immune deficiency syndromes (1999) 2016 Dec 73(4) 454-462
Serology Enhances Molecular Diagnosis of Respiratory Virus Infections Other than Influenza in Children and Adults Hospitalized with Community-Acquired Pneumonia.  Zhang Yange et al. Journal of clinical microbiology 2016 Oct
Infection With Hepatitis C Virus Genotype 3 is an Independent Risk Factor for End-stage Liver Disease, Hepatocellular Carcinoma, and Liver-related Death.  McMahon Brian J et al. Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association 2016 Oct
The need for a next-generation public health response to rare diseases.  Valdez Rodolfo et al. Genetics in medicine : official journal of the American College of Medical Genetics 2016 Oct
Host associations and genomic diversity of Borrelia hermsii in an endemic focus of tick-borne relapsing fever in western North America. Johnson Tammi L et al. Parasites & vectors 2016 Nov (1) 575
Viral factors in influenza pandemic risk assessment.  Lipsitch Marc et al. eLife 2016 Nov
Understanding pneumococcal serotype 1 biology through population genomic analysis. Chaguza Chrispin et al. BMC infectious diseases 2016 Nov (1) 649
Assessment of fungal diversity in a water-damaged office building. Green Brett J et al. Journal of occupational and environmental hygiene 2016 Oct 0
Complete Genome Sequences of Four Different Bordetella sp. Isolates Causing Human Respiratory Infections.  Weigand Michael R et al. Genome announcements 2016 Oct (5)
Complete Genome Sequence of Human Norovirus Strain GII.P7-GII.6 Detected in a Patient in the United States in 2014.  Yang Zhihui et al. Genome announcements 2016 Oct (5)
A Pyrosequencing-Based Approach to High-Throughput Identification of Influenza A(H3N2) Virus Clades Harboring Antigenic Drift Variants.  Mishin Vasiliy P et al. Journal of clinical microbiology 2016 Oct
Novel Viruses Isolated from Mosquitoes in Pantanal, Brazil.  Pauvolid-Corrêa Alex et al. Genome announcements 2016 Nov (6)
Lymphatic Filariasis Elimination in American Samoa: Evaluation of Molecular Xenomonitoring as a Surveillance Tool in the Endgame. Lau Colleen L et al. PLoS neglected tropical diseases 2016 Nov (11) e0005108
Development and Characterization of Recombinant Virus Generated from a New World Zika Virus Infectious Clone.  Weger-Lucarelli James et al. Journal of virology 2016 Oct
Identification of Blood Meals from Potential Arbovirus Mosquito Vectors in the Peruvian Amazon Basin. Palermo Pedro M et al. The American journal of tropical medicine and hygiene 2016 Nov (5) 1026-1030
Complete, Closed Genome Sequences of 10 Salmonella enterica subsp. enterica Serovar Typhimurium Strains Isolated from Human and Bovine Sources.  Nguyen Scott V et al. Genome announcements 2016 Nov (6)
Use of DNA barcoding to distinguish the malaria vector Anopheles neivai in Colombia. López-Rubio Andrés et al. Zootaxa 2016 Oct (4) 377-389
The effect of phylogenetic signal reduction on genotyping of hepatitis E viruses of the species Orthohepevirus A.  Purdy Michael A et al. Archives of virology 2016 Nov
1970s and 'Patient 0' HIV-1 genomes illuminate early HIV/AIDS history in North America.  Worobey Michael et al. Nature 2016 Oct
Lassa and Ebola virus inhibitors identified using minigenome and recombinant virus reporter systems.  Welch Stephen R et al. Antiviral research 2016 Oct
Xpert MTB/RIF Assay shows faster clearance of M. tuberculosis DNA with higher rifapentine exposure.  Jayakumar A et al. Journal of clinical microbiology 2016 Oct
Validation of genotype cluster investigations for Mycobacterium tuberculosis: application results for 44 clusters from four heterogeneous United States jurisdictions. Teeter Larry D et al. BMC infectious diseases 2016 Oct (1) 594
Time until emergence of HIV test reactivity following infection with HIV-1: Implications for interpreting test results and retesting after exposure.  Delaney Kevin P et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Oct
Patterns and Trends in Age-Specific Black-White Differences in Breast Cancer Incidence and Mortality - United States, 1999-2014. Richardson Lisa C et al. MMWR. Morbidity and mortality weekly report 2016 Oct 65(40) 1093-1098
Comparison of norovirus genogroup I, II and IV seroprevalence among children in the Netherlands, 1963, 1983 and 2006. van Beek Janko et al. The Journal of general virology 2016 Sep 97(9) 2255-64
Investigation of epizootic papillomatosis in bluegill Lepomis macrochirus (Rafinesque 1810) using next-generation sequencing.  Dill J A et al. Journal of fish diseases 2016 Oct
Naturally Occurring Genetic Variants of Human Acetylcholinesterase and Butyrylcholinesterase and Their Potential Impact on the Risk of Toxicity from Cholinesterase Inhibitors. Lockridge Oksana et al. Chemical research in toxicology 2016 Sep 29(9) 1381-92
Increase in Middle East Respiratory Syndrome-Coronavirus Cases in Saudi Arabia Linked to Hospital Outbreak With Continued Circulation of Recombinant Virus, July 1-August 31, 2015. Assiri Abdullah M et al. Open forum infectious diseases 2016 Sep 3(3) ofw165
Clinical Impact on Tuberculosis Treatment Outcomes of Discordance Between Molecular and Growth-Based Assays for Rifampin Resistance, California 2003-2013. Shah Neha S et al. Open forum infectious diseases 2016 Sep 3(3) ofw150
A Novel Rapidly Growing Mycobacterium Species Causing an Abdominal Cerebrospinal Fluid Pseudocyst Infection. Hussain Cory K et al. Open forum infectious diseases 2016 Sep 3(3) ofw146
Comparative genomic analysis of Haemophilus haemolyticus and non-typeable Haemophilus influenzae and a new testing scheme for their discrimination.  Hu Fang et al. Journal of clinical microbiology 2016 Oct
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes. Moura Alexandra et al. Nature microbiology 2016 Oct 16185
Use of quantitative molecular diagnostic methods to identify causes of diarrhoea in children: a reanalysis of the GEMS case-control study. Liu Jie et al. Lancet (London, England) 2016 Sep 388(10051) 1291-301
Characteristics of Clusters of Salmonella and Escherichia coli O157 Detected by Pulsed-Field Gel Electrophoresis that Predict Identification of Outbreaks.  Jones Timothy F et al. Foodborne pathogens and disease 2016 Sep
Investigation of First Identified mcr-1 Gene in an Isolate from a U.S. Patient - Pennsylvania, 2016. Kline Kelly E et al. MMWR. Morbidity and mortality weekly report 2016 65(36) 977-8
Investigation of Escherichia coli Harboring the mcr-1 Resistance Gene - Connecticut, 2016. Vasquez Amber M et al. MMWR. Morbidity and mortality weekly report 2016 65(36) 979-80
The genomes of three North American orthopoxviruses.  Smithson Chad et al. Virus genes 2016 Sep
Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa. et al. PLoS neglected tropical diseases 2016 Sep 10(9) e0004781
Whole-Genome Characterization of Epidemic Neisseria meningitidis Serogroup C and Resurgence of Serogroup W, Niger, 2015. Kretz Cecilia B et al. Emerging infectious diseases 2016 Oct (10) 1762-1768
Population-Level Effects of Human Papillomavirus Vaccination Programs on Infections with Nonvaccine Genotypes. Mesher David et al. Emerging infectious diseases 2016 Oct (10) 1732-1740
Ebola Virus Replication and Disease Without Immunopathology in Mice Expressing Transgenes to Support Human Myeloid and Lymphoid Cell Engraftment.  Spengler Jessica R et al. The Journal of infectious diseases 2016 Sep
Biochemical and Structural Insights into the Preference of Nairoviral DeISGylases for Interferon-Stimulated Gene Product 15 Originating from Certain Species. Deaton M K et al. Journal of virology 2016 Sep 90(18) 8314-27
Complete Genome Sequences of Bordetella pertussis Vaccine Reference Strains 134 and 10536.  Weigand Michael R et al. Genome announcements 2016 4(5)
Executive Summary: Official American Thoracic Society/Centers for Disease Control and Prevention/Infectious Diseases Society of America Clinical Practice Guidelines: Treatment of Drug-Susceptible Tuberculosis. Nahid Payam et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Oct 63(7) 853-67
Detection of mucormycetes and other pathogenic fungi in formalin fixed paraffin embedded and fresh tissues using the extended region of 28S rDNA.  Gade Lalitha et al. Medical mycology 2016 Sep
Dynamics of genome change among Legionella species.  Joseph Sandeep J et al. Scientific reports 2016 33442
Development of a multilocus sequence typing tool for high-resolution subtyping and genetic structure characterization of Cryptosporidium ubiquitum. Tang Ying et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Sep 256-261
Genetic Characterisation of Plasmodium falciparum Isolates with Deletion of the pfhrp2 and/or pfhrp3 Genes in Colombia: The Amazon Region, a Challenge for Malaria Diagnosis and Control.  Dorado Erika Jimena et al. PloS one 2016 (9) e0163137
Xpert MTB/RIF - why the lack of morbidity and mortality impact in intervention trials?  Auld Andrew F et al. Transactions of the Royal Society of Tropical Medicine and Hygiene 2016 Sep
Genomic epidemiology of gonococcal resistance to extended spectrum cephalosporins, macrolides, and fluoroquinolones in the US, 2000-2013.  Grad Yonatan H et al. The Journal of infectious diseases 2016 Sep
Streptococcus pneumoniae of Serotypes 9 and 14 Circulating in Brazil Over a 23-Year Period Prior to the Introduction of PCV10: Role of International Clones in the Evolution of Antimicrobial Resistance and Description of a Novel Genotype.  Pinto Tatiana C A et al. Antimicrobial agents and chemotherapy 2016 Aug
Host-pathogen evolutionary signatures reveal dynamics and future invasions of vampire bat rabies.  Streicker Daniel G et al. Proceedings of the National Academy of Sciences of the United States of America 2016 Sep
Clonal Evolution of Enterocytozoon bieneusi Populations in Swine and Genetic Differentiation in Subpopulations between Isolates from Swine and Humans. Wan Qiang et al. PLoS neglected tropical diseases 2016 Aug 10(8) e0004966
Evolution of atypical enteropathogenic E. coli by repeated acquisition of LEE pathogenicity island variants. Ingle Danielle J et al. Nature microbiology 2016 115010
Rotavirus Strain Trends During the Postlicensure Vaccine Era: United States, 2008-2013. Bowen Michael D et al. The Journal of infectious diseases 2016 Sep 214(5) 732-8
Phthalate pregnancy exposure and male offspring growth from the intra-uterine period to five years of age. Botton Jérémie et al. Environmental research 2016 Sep 151601-609
Epidemiology matters: peering inside the "black box" in economic evaluations of genetic testing.  Grosse Scott D et al. Genetics in medicine : official journal of the American College of Medical Genetics 2016 Sep
Primary Amebic Meningoencephalitis: What Have We Learned in the Last 5 Years? Cope Jennifer R et al. Current infectious disease reports 2016 Sep (10) 31
Genetic profiles and antimicrobial resistance of Streptococcus pneumoniae non-PCV10 serotype isolates recovered from meningitis cases in Salvador, Brazil.  Azevedo Jailton et al. Journal of medical microbiology 2016 Sep
Bunyaviruses are common in male and female Ixodes scapularis ticks in central Pennsylvania.  Sakamoto Joyce M et al. PeerJ 2016 e2324
Development and Characterization of Reference Materials for Genetic Testing: Focus on Public Partnerships. Kalman Lisa V et al. Annals of laboratory medicine 2016 Nov 36(6) 513-20
Identification and analysis of informative single nucleotide polymorphisms in 16S rRNA gene sequences of the Bacillus cereus group.  Hakovirta Janetta R et al. Journal of clinical microbiology 2016 Aug
Ebola Virus Disease Diagnostics, Sierra Leone: Analysis of Real-time Reverse Transcription-Polymerase Chain Reaction Values for Clinical Blood and Oral Swab Specimens.  Erickson Bobbie R et al. The Journal of infectious diseases 2016 Aug
Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler.  Shepard Samuel S et al. BMC genomics 2016 708
Modeling the functional state of the reverse transcriptase of hepatitis B virus and its application to probing drug-protein interaction. Xu Xiaojun et al. BMC bioinformatics 2016 17 Suppl 8280
Maternal colonization with Streptococcus agalactiae and associated stillbirth and neonatal disease in coastal Kenya. Seale Anna C et al. Nature microbiology 2016 1(7) 16067
Hepatocellular Carcinoma Risk in Alaska Native Children and Young Adults with Hepatitis B Virus: Retrospective Cohort Analysis.  Gounder Prabhu P et al. The Journal of pediatrics 2016 Aug
Finishing monkeypox genomes from short reads: assembly analysis and a neural network method.  Zhao Kun et al. BMC genomics 2016 497
High-Quality Genome Assembly and Annotation for Plasmodium coatneyi, Generated Using Single-Molecule Real-Time PacBio Technology.  Chien Jung-Ting et al. Genome announcements 2016 (5)
HIV Infection Linked to Injection Use of Oxymorphone in Indiana, 2014-2015. Peters Philip J et al. The New England journal of medicine 2016 Jul 375(3) 229-39
Global phylogeography and evolutionary history of Shigella dysenteriae type 1.  Njamkepo Elisabeth et al. Nature microbiology 2016 16027
Genomic analyses of Neisseria gonorrhoeae reveal an association of the gonococcal genetic island with antimicrobial resistance.  Harrison Odile B et al. The Journal of infection 2016 Aug
Non-falciparum malaria in Dakar: a confirmed case of Plasmodium ovale wallikeri infection. Diallo Mamadou A et al. Malaria journal 2016 15(1) 429
Reducing Health Inequities in the U.S.: Recommendations From the NHLBI's Health Inequities Think Tank Meeting. Sampson Uchechukwu K A et al. Journal of the American College of Cardiology 2016 Aug 68(5) 517-24
Emergence of epidemic Neisseria meningitidis serogroup C in Niger, 2015: an analysis of national surveillance data.  Sidikou Fati et al. The Lancet. Infectious diseases 2016 Aug
Complete Genome Sequences of the Historical Legionella pneumophila Strains OLDA and Pontiac.  Mercante Jeffrey W et al. Genome announcements 2016 (4)
Notes from the Field: Outbreak of Listeriosis Associated with Consumption of Packaged Salad - United States and Canada, 2015-2016.  Self Julie L et al. MMWR. Morbidity and mortality weekly report (33) 879-881
Evaluation of library preparation methods for Illumina next generation sequencing of small amounts of DNA from foodborne parasites.  Nascimento Fernanda S et al. Journal of microbiological methods 2016 Aug
Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings.  Feasey Nicholas A et al. Nature genetics 2016 Aug
Will Precision Medicine Improve Population Health?  Khoury Muin J et al. JAMA 2016 Aug
Knockdown Resistance Mutations in Aedes aegypti (Diptera: Culicidae) From Puerto Rico.  Ponce-García Gustavo et al. Journal of medical entomology 2016 Aug
Plasmodium Parasitemia Associated With Increased Survival in Ebola Virus-Infected Patients.  Rosenke Kyle et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Aug
Characteristics of serogroup 20?S.pneumoniae isolates from Brazil. Caierão Juliana et al. BMC infectious diseases 2016 16(1) 418
West Nile Virus Temperature Sensitivity and Avian Virulence Are Modulated by NS1-2B Polymorphisms. Dietrich Elizabeth A et al. PLoS neglected tropical diseases 2016 Aug (8) e0004938
Using whole genome sequencing to identify resistance determinants and predict antimicrobial resistance phenotypes for year 2015 invasive pneumococcal disease isolates recovered in the United States.  Metcalf Benjamin J et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2016 Aug
Assessment of submicroscopic infections and gametocyte carriage of Plasmodium falciparum during peak malaria transmission season in a community-based cross-sectional survey in western Kenya, 2012.  Zhou Zhiyong et al. Malaria journal 2016 (1) 421
Population Genetic Analysis Reveals a High Genetic Diversity in the Brazilian Cryptococcus gattii VGII Population and Shifts the Global Origin from the Amazon Rainforest to the Semi-arid Desert in the Northeast of Brazil. Souto Ana C P et al. PLoS neglected tropical diseases 2016 Aug (8) e0004885
Treatment as Prevention: Characterization of partner infections in the HIV Prevention Trials Network 052 trial.  Eshleman Susan H et al. Journal of acquired immune deficiency syndromes (1999) 2016 Aug
Population-based precision cancer screening: a symposium on evidence, epidemiology, and next steps.  Marcus Pamela M et al. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2016 Aug
Inhibition of influenza A virus matrix and nonstructural gene expression using RNA interference. McMillen Cynthia M et al. Virology 2016 Jul 497171-184
Annotated draft genome sequences of three species of Cryptosporidium: C. meleagridis isolate UKMEL1, C. baileyi isolate TAMU-09Q1, and C. hominis isolates TU502_2012 and UKH1.  Ifeonu Olukemi O et al. Pathogens and disease 2016 Aug
Official American Thoracic Society/Centers for Disease Control and Prevention/Infectious Diseases Society of America Clinical Practice Guidelines: Treatment of Drug-Susceptible Tuberculosis.  Nahid Payam et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Aug
Prevention of mother-to-child transmission of hepatitis B virus: a phase III, placebo-controlled, double-blind, randomized clinical trial to assess the efficacy and safety of a short course of tenofovir disoproxil fumarate in women with hepatitis B virus e-antigen. Jourdain Gonzague et al. BMC infectious diseases 2016 16393
Prolonged Detection of Zika Virus RNA in Pregnant Women.  Meaney-Delman Dana et al. Obstetrics and gynecology 2016 Jul
Preliminary Evaluation of the Effect of Investigational Ebola Virus Disease Treatments on Viral Genome Sequences.  Whitmer Shannon L M et al. The Journal of infectious diseases 2016 Aug
Assuring the Quality of Next-Generation Sequencing in Clinical Microbiology and Public Health Laboratories.  Gargis Amy S et al. Journal of clinical microbiology 2016 Aug
Prevalence of transmitted HIV-1 drug resistance among young adults attending HIV counselling and testing clinics in Kigali, Rwanda.  Mutagoma Mwumvaneza et al. Antiviral therapy 2016 (3) 247-51
Genotypes of rubella virus and the epidemiology of rubella infections in the Democratic Republic of the Congo, 2004-2013. Pukuta Elizabeth et al. Journal of medical virology 2016 Oct (10) 1677-84
An Optimized Method for Quantification of Pathogenic Leptospira in Environmental Water Samples. Riediger Irina N et al. PloS one 2016 11(8) e0160523
MLST and Whole-Genome-Based Population Analysis of Cryptococcus gattii VGIII Links Clinical, Veterinary and Environmental Strains, and Reveals Divergent Serotype Specific Sub-populations and Distant Ancestors. Firacative Carolina et al. PLoS neglected tropical diseases 2016 Aug (8) e0004861
Population structure of invasive Streptococcus pneumoniae isolates among Alaskan children in the conjugate vaccine era, 2001 to 2013.  Miernyk Karen M et al. Diagnostic microbiology and infectious disease 2016 Jul
Spike gene deletion quasispecies in serum of patient with acute MERS-CoV infection.  Lu Xiaoyan et al. Journal of medical virology 2016 Aug
HIV virological failure and drug resistance in a cohort of Tanzanian HIV-infected adults. Hawkins Claudia et al. The Journal of antimicrobial chemotherapy 2016 Jul (7) 1966-74
Virulence and Evolution of West Nile Virus, Australia, 1960-2012. Prow Natalie A et al. Emerging infectious diseases 2016 Aug (8) 1353-62
Influence of Aspergillus fumigatus conidia viability on murine pulmonary microRNA and mRNA expression following subchronic inhalation exposure.  Croston Tara L et al. Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology 2016 Jul
Development of a Rickettsia bellii-Specific TaqMan Assay Targeting the Citrate Synthase Gene.  Hecht Joy A et al. Journal of medical entomology 2016 Jul
Characterization of clinical and environmental isolates of Vibrio cidicii sp. nov., a close relative of Vibrio navarrensis.  Orata Fabini D et al. International journal of systematic and evolutionary microbiology 2016 Jul
Full-Genome Sequence of a Neuroinvasive West Nile Virus Lineage 2 Strain from a Fatal Horse Infection in South Africa.  Mentoor Juliet L D et al. Genome announcements 2016 (4)
Phylogenetic and geographic patterns of bartonella host shifts among bat species.  McKee Clifton D et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Jul
Paired real-time PCR assays for detection of Borrelia miyamotoi in North American Ixodes scapularis and Ixodes pacificus (Acari: Ixodidae).  Graham Christine B et al. Ticks and tick-borne diseases 2016 Jul
Enterovirus D68 Infection in Children with Acute Flaccid Myelitis, Colorado, USA, 2014. Aliabadi Negar et al. Emerging infectious diseases 2016 Aug (8) 1387-94
Consensus Report of the 2015 Weinman International Conference on Mesothelioma.  Carbone Michele et al. Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer 2016 Aug 11(8) 1246-62
The Cancer Epidemiology Descriptive Cohort Database: A Tool to Support Population-Based Interdisciplinary Research.  Kennedy Amy E et al. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2016 Jul
Antiretroviral Therapy for the Prevention of HIV-1 Transmission.  Cohen Myron S et al. The New England journal of medicine 2016 Jul
Unique Presentation of Orf Virus Infection in a Thermal Burn Patient After Receiving an Autologous Skin Graft.  Hsu Christopher H et al. The Journal of infectious diseases 2016 Jul
Multilocus Sequence Typing Tool for Cyclospora cayetanensis. Guo Yaqiong et al. Emerging infectious diseases 2016 Aug (8) 1464-7
Tick-Borne Relapsing Fever Outbreak Among a High School Football Team at an Outdoor Education Camping Trip, Arizona, 2014.  Jones Jefferson M et al. The American journal of tropical medicine and hygiene 2016 Jul
Plasmodium falciparum Drug-Resistant Haplotypes and Population Structure in Postearthquake Haiti, 2010.  Morton Lindsay Carol et al. The American journal of tropical medicine and hygiene 2016 Jul
Sensitive and specific nested PCR assay for detection of rotavirus A in samples with a low viral load. Mijatovic-Rustempasic Slavica et al. Journal of virological methods 2016 Jul 41-46
Reversion of Cold-adapted Live Attenuated Influenza Vaccine into a Pathogenic Virus.  Zhou Bin et al. Journal of virology 2016 Jul
Complete Genome Sequences of Three Outbreak-Associated Legionella pneumophila Isolates.  Morrison Shatavia S et al. Genome announcements 2016 (4)
An integrated genomic and transcriptomic survey of mucormycosis-causing fungi.  Chibucos Marcus C et al. Nature communications 2016 12218
Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease.  Shaw Kelly A et al. Genome medicine 2016 (1) 75
Chromosome and Linear Plasmid Sequences of a 2015 Human Isolate of the Tick-Borne Relapsing Fever Spirochete, Borrelia turicatae.  Kingry Luke C et al. Genome announcements 2016 (4)
Molecular Typing of Treponema pallidum in Ocular Syphilis. Oliver Sara et al. Sexually transmitted diseases 2016 Aug (8) 524-527
Risk Factors for Herpes Zoster Among Adults. Marin Mona et al. Open forum infectious diseases 2016 Sep 3(3) ofw119
Cryptosporidium species and C. parvum subtypes in dairy calves and goat kids reared under traditional farming systems in Turkey.  Taylan-Ozkan Aysegul et al. Experimental parasitology 2016 Jun
Maternal colonisation with Streptococcus agalactiae, and associated stillbirth and neonatal disease in coastal Kenya.  Seale Anna C et al. Nature microbiology 2016 Jul 1(7)
The use of whole genome sequencing for detecting antimicrobial resistance in nontyphoidal Salmonella.  McDermott Patrick F et al. Antimicrobial agents and chemotherapy 2016 Jul
Reduced evolutionary rate in reemerged Ebola virus transmission chains. Blackley David J et al. Science advances 2016 Apr (4) e1600378
Complete Genome Sequences of 11 Haemophilus ducreyi Isolates from Children with Cutaneous Lesions in Vanuatu and Ghana.  Pillay Allan et al. Genome announcements 2016 (4)
Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species.  Ansari Hifzur Rahman et al. International journal for parasitology 2016 Jul
Live virus vaccines based on a vesicular stomatitis virus (VSV) backbone: Standardized template with key considerations for a risk/benefit assessment.  Clarke David K et al. Vaccine 2016 Jul
Quantitative Real-time PCR Assays for Detection and Type-Specific Identification of the Endemic Species C Human Adenoviruses.  Lu Xiaoyan et al. Journal of virological methods 2016 Jun
Molecular and Growth-Based Drug Susceptibility Testing of Mycobacterium tuberculosis Complex for Ethambutol Resistance in the United States.  Yakrus Mitchell A et al. Tuberculosis research and treatment 2016 3404860
Virus fitness differences observed between two naturally occurring isolates of Ebola virus Makona variant using a reverse genetics approach. Albariño César G et al. Virology 2016 Jun 496237-243
High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps.  Lindsey Rebecca L et al. Genome announcements 2016 (3)
Multiplex assay for subtyping avian influenza A viruses by cDNA hybridization and adapter-mediated amplification.  Yang Genyan et al. Applied microbiology and biotechnology 2016 Jul
Kinetic Analysis of Biomarkers in a Cohort of US Patients With Ebola Virus Disease.  McElroy Anita K et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Jun
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Using Multiplex Molecular Testing to Determine the Etiology of Acute Gastroenteritis in Children.  Nicholson Maribeth R et al. The Journal of pediatrics 2016 Jun
Molecular survey of arthropod-borne pathogens in sheep keds (Melophagus ovinus), Central Europe.  Rudolf Ivo et al. Parasitology research 2016 Jun
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Turtles as a Possible Reservoir of Nontyphoidal Salmonella in Shanghai, China.  Zhang Jianmin et al. Foodborne pathogens and disease 2016 Jun
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Complete and Closed Genome Sequences of 10 Salmonella enterica subsp. enterica Serovar Anatum Isolates from Human and Bovine Sources.  Nguyen Scott V et al. Genome announcements 2016 4(3)
Interim Guidance for Interpretation of Zika Virus Antibody Test Results. Rabe Ingrid B et al. MMWR. Morbidity and mortality weekly report 2016 65(21) 543-6
PCR serotyping of Streptococcus pneumoniae from culture-negative specimens: Novel primers to detect serotypes within serogroup-18.  Tanmoy Arif M et al. Journal of clinical microbiology 2016 Jun
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Implementation of Whole Genome Sequencing (WGS) for Identification and Characterization of Shiga Toxin-Producing Escherichia coli (STEC) in the United States.  Lindsey Rebecca L et al. Frontiers in microbiology 2016 766
The Philadelphia Glaucoma Detection and Treatment Project: Detection Rates and Initial Management.  Waisbourd Michael et al. Ophthalmology 2016 May
Sentinel Surveillance for Influenza among Severe Acute Respiratory Infection and Acute Febrile Illness Inpatients at Three Hospitals in Ghana.  Jones Alexander H et al. Influenza and other respiratory viruses 2016 May
Genomic and Phenotypic Analysis Reveal the Emergence of an Atypical Salmonella Senftenberg Variant in China.  Abd El Ghany Moataz et al. Journal of clinical microbiology 2016 May
Molecular characterization of the first G24P[14] rotavirus strain detected in humans.  Ward M Leanne et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 May
Origin and spread of HIV-1 in persons who inject drugs in Bulgaria.  Alexiev Ivailo et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 May
Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls. Hu Yi-Juan et al. PLoS genetics 2016 May 12(5) e1006040
Complete Sequence of the Smallest Polyomavirus Genome, Giant Guitarfish (Rhynchobatus djiddensis) Polyomavirus 1.  Dill Jennifer A et al. Genome announcements 2016 4(3)
Plasmodium vivax malaria recurrence after radical treatment with chloroquine-primaquine standard regimen in Turbo, Colombia: Results from a prospective study.  Zuluaga-Idárraga Lina et al. Antimicrobial agents and chemotherapy 2016 May
MPTP Neurotoxicity is Highly Concordant Between the Sexes Among BXD Recombinant Inbred Mouse Strains.  Alam Gelareh et al. Neurotoxicology 2016 May
Validation of a standardized extraction method for formalin-fixed paraffin-embedded tissue samples. Lagheden Camilla et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2016 Apr 8036-39
Enhanced genetic characterization of influenza A(H3N2) viruses and vaccine effectiveness by genetic group, 2014-2015.  Flannery Brendan et al. The Journal of infectious diseases 2016 May
Reemergence of Dengue in Southern Texas, 2013. Thomas Dana L et al. Emerging infectious diseases 2016 Jun (6) 1002-7
Cold Chain and Virus Free chloroplast-made Booster Vaccine to Confer Immunity Against Different Polio Virus Serotypes.  Chan Hui-Ting et al. Plant biotechnology journal 2016 May
Correction for Pattabiraman and Bopp, Draft Whole-Genome Sequences of Nine Enterotoxigenic Escherichia coli Serogroup O6 Strains.  Pattabiraman Vaishnavi et al. Genome announcements 2016 4(3)
Protocol for a population-based molecular epidemiology study of tuberculosis transmission in a high HIV-burden setting: the Botswana Kopanyo study.  Zetola N M et al. BMJ open 2016 (5) e010046
Hepatitis B Reverse Seroconversion and Transmission in a Hemodialysis Center: A Public Health Investigation and Case Report.  Rhea Sarah et al. American journal of kidney diseases : the official journal of the National Kidney Foundation 2016 May
Convergence of Implementation Science, Precision Medicine, and the Learning Health Care System: A New Model for Biomedical Research. Chambers David A et al. JAMA 2016 May 315(18) 1941-1942
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Molecular detection of airborne Coccidioides in Tucson, Arizona.  Chow Nancy A et al. Medical mycology 2016 May
Three Genome Sequences of Legionella pneumophila subsp. pascullei Associated with Colonization of a Health Care Facility.  Kozak-Muiznieks Natalia A et al. Genome announcements 2016 (3)
Borrelia bissettiae sp. nov. and Borrelia californiensis sp. nov. Prevail in Diverse Enzootic Transmission Cycles.  Margos Gabriele et al. International journal of systematic and evolutionary microbiology 2016 Jan
What Predicts an Advanced-Stage Diagnosis of Breast Cancer? Sorting Out the Influence of Method of Detection, Access to Care, and Biologic Factors.  Lipscomb Joseph et al. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2016 Jan
Evolving epidemiology of reported cryptosporidiosis cases in the United States, 1995-2012. Painter J E et al. Epidemiology and infection 2016 Jun 144(8) 1792-802
In vivo efficacy of artemether-lumefantrine and artesunate-amodiaquine for uncomplicated Plasmodium falciparum malaria in Malawi, 2014. Paczkowski Magdalena et al. Malaria journal 2016 15(1) 236
Reversion to wildtype of a mutated and nonfunctional coxsackievirus B3CRE(2C).  Smithee Shane et al. Virus research 2016 Apr
Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever.  Engelthaler David M et al. mBio 2016 (2)
Comparative genomics reveals Cyclospora cayetanensis possesses coccidia-like metabolism and invasion components but unique surface antigens.  Liu Shiyou et al. BMC genomics 2016 (1) 316
Innate Resistance and Susceptibility to Norovirus Infection. Nordgren Johan et al. PLoS pathogens 2016 Apr (4) e1005385
In vivo activation of a T helper 2-driven innate immune response in lung fibrosis induced by multi-walled carbon nanotubes.  Dong Jie et al. Archives of toxicology 2016 Apr
Genetic variation of mini- and microsatellites and a clonal structure in Enterocytozoon bieneusi population in foxes and raccoon dogs and population differentiation of the parasite between fur animals and humans.  Li Wei et al. Parasitology research 2016 Apr
The International Dimension of the U.S. HIV Transmission Network and Onward Transmission of HIV Recently Imported into the United States.  Wertheim Joel O et al. AIDS research and human retroviruses 2016 Apr
Molecular Insights into Crimean-Congo Hemorrhagic Fever Virus.  Zivcec Marko et al. Viruses 2016 (4)
Etiological role and repeated infections of sapovirus among children aged less than two years in a cohort study in a peri-urban community of Peru.  Liu Xiaofang et al. Journal of clinical microbiology 2016 Apr
Development and Implementation of the ANISA Labeling and Tracking System for Biological Specimens. Connor Nicholas E et al. The Pediatric infectious disease journal 2016 May 35(5 Suppl 1) S29-34
Implementation of Nationwide Real-Time Whole-Genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.  Jackson Brendan R et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Apr
The Next Generation of Risk Assessment Multiyear Study- Highlights of Findings, Applications to Risk Assessment and Future Directions.  Cote Ila et al. Environmental health perspectives 2016 Apr
Phylogeny of Zika Virus in Western Hemisphere, 2015. Lanciotti Robert S et al. Emerging infectious diseases 2016 May (5) 933-5
Biological and Epidemiological Features of Antibiotic-Resistant Streptococcus pneumoniae in Pre- and Post-Conjugate Vaccine Eras: a United States Perspective. Kim Lindsay et al. Clinical microbiology reviews 2016 Jul (3) 525-52
Laboratory Methods for Determining Etiology of Neonatal Infection at Population-based Sites in South Asia: The ANISA Study. Saha Samir K et al. The Pediatric infectious disease journal 2016 May (5 Suppl 1) S16-22
Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-O157 Shiga toxin-producing Escherichia coli.  Timmons Chris et al. Journal of microbiological methods 2016 Apr
Prevalent mutator genotype identified in fungal pathogen Candida glabrata promotes multi-drug resistance.  Healey Kelley R et al. Nature communications 2016 11128
Sustained Effectiveness of Rotavirus Vaccine Against Very Severe Rotavirus Disease Through the Second Year of Life, Bolivia 2013-2014. Pringle Kimberly D et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 May 62 Suppl 2S115-20
The molecular characterizations of surface proteins hemagglutinin and neuraminidase from recent H5Nx avian influenza viruses.  Yang Hua et al. Journal of virology 2016 Apr
Serotypes and genotypes of Streptococcus pneumoniae isolates from Trinidad and Tobago.  Nurse-Lucas Michele et al. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2016 Apr
Surveillance Systems to Track Progress Toward Polio Eradication - Worldwide, 2014-2015.  Snider Cynthia J et al. MMWR. Morbidity and mortality weekly report 2016 (13) 346-51
Effectiveness of Monovalent Rotavirus Vaccine After Programmatic Implementation in Botswana: A Multisite Prospective Case-Control Study. Gastañaduy Paul A et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 May S161-7
Genomic resolution of outbreak-associated Legionella pneumophila serogroup 1 isolates from New York State.  Raphael Brian H et al. Applied and environmental microbiology 2016 Apr
Importation and outbreak of wild polioviruses from 2000 to 2014 and interruption of transmission in Cameroon.  Endegue-Zanga Marie Claire et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2016 Mar 7918-24
Transmission of Middle East Respiratory Syndrome Coronavirus Infections in Healthcare Settings, Abu Dhabi. Hunter Jennifer C et al. Emerging infectious diseases 2016 Apr (4) 647-56
The spread of hepatitis C virus genotype 1a in North America: a retrospective phylogenetic study.  Joy Jeffrey B et al. The Lancet. Infectious diseases 2016 Mar
Rapid Antimicrobial Susceptibility Testing of Bacillus anthracis, Yersinia pestis, and Burkholderia pseudomallei Using Laser Light Scattering Technology.  Bugrysheva Julia V et al. Journal of clinical microbiology 2016 Mar
Proposed reference sequences for hepatitis E virus subtypes. Smith Donald B et al. The Journal of general virology 2016 Mar 97(3) 537-42
The Evolution of Advanced Molecular Diagnostics for the Detection and Characterization of Mycoplasma pneumoniae.  Diaz Maureen H et al. Frontiers in microbiology 2016 232
Zika Virus.  Petersen Lyle R et al. The New England journal of medicine 2016 Mar
Adherence of Primary Care Physicians to Evidence-Based Recommendations to Reduce Ovarian Cancer Mortality. Stewart Sherri L et al. Journal of women's health (2002) 2016 Mar 25(3) 235-41
A cationic liposome-DNA complexes adjuvant (JVRS-100) enhances the immunogenicity and cross-protective efficacy of pre-pandemic influenza A (H5N1) vaccine in ferrets. Liu Feng et al. Virology 2016 Mar 492197-203
Changes in the expression of calcitonin gene-related peptide after exposure to injurious stretch-shortening contractions. Johnson C et al. Experimental gerontology 2016 Mar 791-7
Maternal phthalate exposure during pregnancy is associated with DNA methylation of LINE-1 and Alu repetitive elements in Mexican-American children. Huen Karen et al. Environmental research 2016 Mar 14855-62
Multistate Outbreak of Respiratory Infections among Unaccompanied Children, June-July 2014.  Tomczyk Sara et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Mar
Advanced molecular detection of malarone resistance.  Talundzic Eldin et al. Antimicrobial agents and chemotherapy 2016 Mar
Phylogeography of Rhipicephalus sanguineus sensu lato and its relationships with climatic factors.  Zemtsova Galina E et al. Experimental & applied acarology 2016 Mar
Incidence of Hepatocellular Carcinoma According to Hepatitis B Virus Genotype in Alaska Native People.  Ching Lance K et al. Liver international : official journal of the International Association for the Study of the Liver 2016 Mar
Genome-wide siRNA Screening at Biosafety Level 4 Reveals a Crucial Role for Fibrillarin in Henipavirus Infection. Deffrasnes Celine et al. PLoS pathogens 2016 Mar (3) e1005478
Microsatellite Genotyping of Plasmodium vivax Isolates from Pregnant Women in Four Malaria Endemic Countries.  Menegon Michela et al. PloS one 2016 (3) e0152447
Pediatric Norovirus in Developing Countries: A Picture Slowly Comes Into Focus.  Lopman Benjamin A et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Mar
Molecular and Phenotypic Characterization of a Highly Evolved Type 2 Vaccine-Derived Poliovirus Isolated from Seawater in Brazil, 2014.  Cassemiro Klécia Marília S de Melo et al. PloS one 2016 (3) e0152251
Sensitive sentinel mutation screening reveals differential underestimation of transmitted HIV drug resistance among demographic groups.  Li Jin-Fen et al. AIDS (London, England) 2016 Mar
Genotypes of Cryptosporidium spp., Enterocytozoon bieneusi and Giardia duodenalis in dogs and cats in Shanghai, China.  Xu Hailing et al. Parasites & vectors 2016 121
Full genome characterization of the first G3P[24] rotavirus strain detected in humans provides evidence of interspecies reassortment and mutational saturation in the VP7 gene. Mijatovic-Rustempasic Slavica et al. The Journal of general virology 2016 Feb 97(2) 389-402
Draft Genome Sequence of Mycobacterium wolinskyi, a Rapid-Growing Species of Nontuberculous Mycobacteria.  de Man Tom J B et al. Genome announcements 2016 4(2)
Phylogenetic Analysis of Poliovirus Sequences. Jorba Jaume et al. Methods in molecular biology (Clifton, N.J.) 2016 1387227-37
Molecular Properties of Poliovirus Isolates: Nucleotide Sequence Analysis, Typing by PCR and Real-Time RT-PCR.  Burns Cara C et al. Methods in molecular biology (Clifton, N.J.) 2016 177-212
The US Culture Collection Network lays the foundation for progress in preservation of valuable microbial resources.  McCluskey Kevin et al. Phytopathology 2016 Mar
Immunogenicity of a chimeric Plasmodium falciparum merozoite surface protein vaccine in Aotus monkeys. Burns James M et al. Malaria journal 2016 15(1) 159
An Economic Evaluation of PulseNet: A Network for Foodborne Disease Surveillance.  Scharff Robert L et al. American journal of preventive medicine 2016 Feb
Rapid detection and typing of pathogenic nonpneumophila Legionella spp. isolates using a multiplex real-time PCR assay. Benitez Alvaro J et al. Diagnostic microbiology and infectious disease 2016 Apr (4) 298-303
Human Rabies - Missouri, 2014.  Pratt P Drew et al. MMWR. Morbidity and mortality weekly report 2016 (10) 253-6
Characterizing the genetic diversity of the monkey malaria parasite Plasmodium cynomolgi.  Sutton Patrick L et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Mar
Whole-Genome Sequencing to Determine Origin of Multinational Outbreak of Sarocladium kiliense Bloodstream Infections.  Etienne Kizee A et al. Emerging infectious diseases 2016 Mar 22(3)
Cardiac Tropism of Borrelia burgdorferi: An Autopsy Study of Sudden Cardiac Death Associated with Lyme Carditis.  Muehlenbachs Atis et al. The American journal of pathology 2016 Mar
Phylogenetic Analysis of Invasive Serotype 1 Pneumococcus in South Africa, 1989-2013.  du Plessis Mignon et al. Journal of clinical microbiology 2016 Mar
Possible Airborne Person-to-Person Transmission of Mycobacterium bovis - Nebraska 2014-2015.  Buss Bryan F et al. MMWR. Morbidity and mortality weekly report 2016 (8) 197-201
Prevalence and dynamics of the K65R drug resistance mutation in HIV-1-infected infants exposed to maternal therapy with lamivudine, zidovudine and either nevirapine or nelfinavir in breast milk.  Inzaule Seth C et al. The Journal of antimicrobial chemotherapy 2016 Mar
Draft Genome Sequences of Strains Representing Each of the Elizabethkingia Genomospecies Previously Determined by DNA-DNA Hybridization.  Nicholson Ainsley C et al. Genome announcements 2016 (2)
Genomic Sequence of the First Porcine Rotavirus Group H Strain in the United States.  Hull Jennifer J et al. Genome announcements 2016 (2)
Use of Malachite Green-Loop Mediated Isothermal Amplification for Detection of Plasmodium spp. Parasites.  Lucchi Naomi W et al. PloS one 2016 (3) e0151437
Kroppenstedtia pulmonis sp. nov. and Kroppenstedtia sanguinis sp. nov., isolated from human patients.  Bell Melissa E et al. Antonie van Leeuwenhoek 2016 Feb
A Multicountry Molecular Analysis of Salmonella enterica Serovar Typhi With Reduced Susceptibility to Ciprofloxacin in Sub-Saharan Africa. Al-Emran Hassan M et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Mar 62 Suppl 1S42-6
Development of Real-Time PCR Methods for the Detection of Bacterial Meningitis Pathogens without DNA Extraction.  Vuong Jeni et al. PloS one 2016 (2) e0147765
Optimizing Virus Identification in Critically Ill Children Suspected of Having an Acute Severe Viral Infection.  Randolph Adrienne G et al. Pediatric critical care medicine : a journal of the Society of Critical Care Medicine and the World Federation of Pediatric Intensive and Critical Care Societies 2016 Feb
Mammalian pathogenesis and transmission of H7N9 influenza viruses from three waves, 2013-2015.  Belser Jessica A et al. Journal of virology 2016 Feb
Nocardia donostiensis sp. nov., isolated from human respiratory specimens.  Ercibengoa Maria et al. Antonie van Leeuwenhoek 2016 Feb
Intestinal microbiome disruption in patients in a long-term acute care hospital: A case for development of microbiome disruption indices to improve infection prevention.  Halpin Alison Laufer et al. American journal of infection control 2016 Feb
Genetic Determinants of Drug Resistance in Mycobacterium tuberculosis and Their Diagnostic Value.  Farhat Maha R et al. American journal of respiratory and critical care medicine 2016 Feb
Implementation of the 21-gene recurrence score test in the United States in 2011.  Lynch Julie A et al. Genetics in medicine : official journal of the American College of Medical Genetics 2016 Feb
Relationship Between Mean Leucocyte Telomere Length and Measures of Allostatic Load in US Reproductive-Aged Women, NHANES 1999-2002.  Ahrens Katherine A et al. Paediatric and perinatal epidemiology 2016 Feb
Characterization of a Salivirus (Picornaviridae) from a Diarrheal Child in Guatemala.  Ng Terry Fei Fan et al. Genome announcements 2016 4(1)
What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira. Fouts Derrick E et al. PLoS neglected tropical diseases 2016 Feb 10(2) e0004403
Detection of Onchocerca volvulus in Skin Snips by Microscopy and Real-Time Polymerase Chain Reaction: Implications for Monitoring and Evaluation Activities.  Thiele Elizabeth A et al. The American journal of tropical medicine and hygiene 2016 Feb
Implementation of the 21-gene recurrence score test in the United States in 2011 Lynch JA, et al. Genetics in Medicine (2016) Feb 18
Cost-Effectiveness/Cost-Benefit Analysis of Newborn Screening for Severe Combined Immune Deficiency in Washington State.  Ding Yao et al. The Journal of pediatrics 2016 Feb
Haematospirillum jordaniae gen. nov., sp. nov., isolated from human blood samples.  Humrighouse B W et al. Antonie van Leeuwenhoek 2016 Feb
Two Distinct Yersinia pestis Populations Causing Plague among Humans in the West Nile Region of Uganda. Respicio-Kingry Laurel B et al. PLoS neglected tropical diseases 2016 Feb 10(2) e0004360
Molecular Epidemiology and Transmission Dynamics of Recent and Long-Term HIV-1 Infections in Rural Western Kenya.  Zeh Clement et al. PloS one 2016 (2) e0147436
Identification of a novel pathogenic Borrelia species causing Lyme borreliosis with unusually high spirochaetaemia: a descriptive study.  Pritt Bobbi S et al. The Lancet. Infectious diseases 2016 Feb
Phylogenetic Analysis of Chikungunya Virus Strains Circulating in the Western Hemisphere.  Lanciotti Robert S et al. The American journal of tropical medicine and hygiene 2016 Feb
Comparison of Phenotypic and Genotypic Approaches to Capsule Typing of Neisseria meningitidis by Use of Invasive and Carriage Isolate Collections. Jones C Hal et al. Journal of clinical microbiology 2016 Jan 54(1) 25-34
Gene expression profiling of rubella virus infected primary endothelial cells of fetal and adult origin. Geyer Henriette et al. Virology journal 2016 13(1) 21
Complete Closed Genome Sequences of Salmonella enterica subsp. enterica Serotypes Anatum, Montevideo, Typhimurium, and Newport, Isolated from Beef, Cattle, and Humans.  Harhay Dayna M et al. Genome announcements 2016 (1)
Probable and possible transfusion-transmitted dengue associated with NS1 antigen-negative but RNA confirmed-positive red blood cells. Matos Desiree et al. Transfusion 2016 Jan (1) 215-22
Ebola Virus RNA Stability in Human Blood and Urine in West Africa's Environmental Conditions. Janvier Frédéric et al. Emerging infectious diseases 2016 Feb (2) 292-4
From genomic medicine to precision medicine: highlights of 2015. Auffray Charles et al. Genome medicine 2016 8(1) 12
Development and Validation of an Improved PCR Method Using the 23S-5S Intergenic Spacer for Detection of Rickettsiae in Dermacentor variabilis Ticks and Tissue Samples from Humans and Laboratory Animals. Kakumanu Madhavi L et al. Journal of clinical microbiology 2016 Apr (4) 972-9
Gene integrated set profile analysis: a context-based approach for inferring biological endpoints.  Kowalski Jeanne et al. Nucleic acids research 2016 Jan
Nanopore Sequencing as a Rapidly Deployable Ebola Outbreak Tool.  Hoenen Thomas et al. Emerging infectious diseases 2016 Feb (2)
Bordetella pertussis Strain Lacking Pertactin and Pertussis Toxin. Williams Margaret M et al. Emerging infectious diseases 2016 Feb (2) 319-22
Public Health and Rare Diseases: Oxymoron No More Valdez R, et al. Chronic Diseases Volume 13 January 14, 2016
First Report of Rickettsia Identical to R. slovaca in Colony-Originated D. variabilis in the United States: Detection, Laboratory Animal Model, and Vector Competence of Ticks.  Zemtsova Galina E et al. Vector borne and zoonotic diseases (Larchmont, N.Y.) 2016 Jan
Identification of Source of Brucella suis Infection in Human by Using Whole-Genome Sequencing, United States and Tonga. Quance Christine et al. Emerging infectious diseases 2016 Jan 22(1) 79-82
Characterization of Bacterial Communities in Selected Smokeless Tobacco Products Using 16S rDNA Analysis.  Tyx Robert E et al. PloS one 2016 (1) e0146939
Molecular Characterization Reveals Diverse and Unknown Malaria Vectors in the Western Kenyan Highlands.  St Laurent Brandyce et al. The American journal of tropical medicine and hygiene 2016 Jan
Cryptosporidium proliferans n. sp. (Apicomplexa: Cryptosporidiidae): Molecular and Biological Evidence of Cryptic Species within Gastric Cryptosporidium of Mammals. Kváč Martin et al. PloS one 2016 11(1) e0147090
Correction for Weigand et al., Complete Genome Sequences of Two Bordetella hinzii Strains Isolated from Humans.  Weigand Michael R et al. Genome announcements 2016 4(1)
Multilocus sequence typing analysis reveals that Cryptococcus neoformans var. neoformans is a recombinant population. Cogliati Massimo et al. Fungal genetics and biology : FG & B 2016 Jan 22-29
Phenotypic, genotypic, and antimicrobial characteristics of Streptococcus halichoeri isolated from humans and proposal to rename Streptococcus halichoeri as Streptococcus halichoeri subsp. halichoeri and description of Streptococcus halichoeri subsp. hominis subsp. nov., a bacterium associated with human clinical infections.  Shewmaker P L et al. Journal of clinical microbiology 2016 Jan
Human Heat shock protein 40 (Hsp40/DnaJB1) promotes influenza A virus replication by assisting nuclear import of viral ribonucleoproteins. Batra Jyoti et al. Scientific reports 2016 619063
The Problem of Carbapenemase Producing Carbapenem-Resistant Enterobacteriaceae Detection.  Lutgring Joseph D et al. Journal of clinical microbiology 2016 Jan
Notes from the Field: Hepatitis C Outbreak in a Dialysis Clinic - Tennessee, 2014.  Muleta Daniel et al. MMWR. Morbidity and mortality weekly report 2016 (50-51) 1386-7
Achievements, challenges and unmet needs for haemophilia patients with inhibitors: Report from a symposium in Paris, France on 20 November 2014. Dargaud Y et al. Haemophilia : the official journal of the World Federation of Hemophilia 2016 Jan 22 Suppl 11-24
Reproducible Research Practices and Transparency across the Biomedical Literature. Iqbal Shareen A et al. PLoS biology 2016 Jan 14(1) e1002333
Multifacility Outbreak of Middle East Respiratory Syndrome in Taif, Saudi Arabia. Assiri Abdullah et al. Emerging infectious diseases 2016 Jan (1) 32-40
Presence of an epigenetic signature of prenatal cigarette smoke exposure in childhood. Ladd-Acosta Christine et al. Environmental research 2016 Jan 144(Pt A) 139-148
Effectiveness of Practices To Increase Timeliness of Providing Targeted Therapy for Inpatients with Bloodstream Infections: a Laboratory Medicine Best Practices Systematic Review and Meta-analysis. Buehler Stephanie S et al. Clinical microbiology reviews 2016 Jan 29(1) 59-103
Survey of influenza and other respiratory viruses diagnostic testing in US hospitals, 2012-2013. Su Su et al. Influenza and other respiratory viruses 2016 Mar (2) 86-90